API for StanleyXu/loci2path
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
| Global functions | |
|---|---|
| biocarta | Man page |
| check.geneid | Man page Source code |
| coveredGene | Man page |
| coveredGene,loci2pathResult-method | Man page |
| description | Man page |
| description,geneSet-method | Man page |
| eqtlGene | Man page |
| eqtlGene,eqtlSet-method | Man page |
| eqtlId | Man page |
| eqtlId,eqtlSet-method | Man page |
| eqtlRange | Man page |
| eqtlRange,eqtlSet-method | Man page |
| eqtlSet | Man page |
| eqtlSet-class | Man page |
| eset.list | Man page |
| geneSet | Man page |
| geneSet-class | Man page |
| geneSetList | Man page |
| geneSetList,geneSet-method | Man page |
| getHeatmap | Man page |
| getHeatmap,loci2pathResult-method | Man page |
| getMat | Man page |
| getMat,loci2pathResult-method | Man page |
| getPathDescription | Man page |
| getPathDescription,loci2pathResult-method | Man page |
| getPval | Man page |
| getPval,loci2pathResult-method | Man page |
| getTissueDegree | Man page |
| getTissueDegree,loci2pathResult-method | Man page |
| getWordcloud | Man page |
| getWordcloud,loci2pathResult-method | Man page |
| loci2pathResult | Man page |
| loci2pathResult-class | Man page |
| numGene | Man page |
| numGene,geneSet-method | Man page |
| query | Man page |
| query,GenomicRanges,eqtlSet,geneSet-method | Man page |
| query,GenomicRanges,list,ANY-method | Man page |
| query,GenomicRanges,list,geneSet-method | Man page |
| query,eqtlSet,geneSet-method | Man page |
| query,list,geneSet-method | Man page |
| query,list-method | Man page |
| query.gr | Man page |
| resultTable | Man page |
| resultTable,loci2pathResult-method | Man page |
| tissue | Man page |
| tissue,eqtlSet-method | Man page |
