getWordcloud-methods: Plot word cloud using frequent terms of pathways and genes

Description Usage Arguments Value Examples

Description

This function draw the enrichment heatmap using wordcloud package.

Usage

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getWordcloud(res, ...)

## S4 method for signature 'loci2pathResult'
getWordcloud(res, min.freq.tissue = 5,
  min.freq.gset = 5, max.words = 50)

Arguments

res

query result from function query.egset.list()

...

additional params

min.freq.tissue

minimum frequency of tissue/cell to be plotted in the word cloud

min.freq.gset

minimum frequency of geneset to be plotted in the word cloud

max.words

maximum words to be generated

Value

empty

Examples

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result <- query(query.gr=query.gr, 
  loci=eset.list, path=biocarta)
getWordcloud(result, min.freq.tissue=2, min.freq.gset=1)

StanleyXu/loci2path documentation built on Sept. 11, 2019, 8:21 a.m.