API for SteeleCD/CNomplexity
Analysis of Complex Copy Cumber and Structural Variants in Cancer Genomes.
| Global functions | |
|---|---|
| ABSOLUTEscore | Source code |
| ABSOLUTEtest | Source code |
| BFBCNscore | Source code |
| CNscore | Man page Source code |
| bootNMF | Man page Source code |
| breakpointsExponential | Source code |
| categoriseCN | Source code |
| chromothripsis | Man page Source code |
| chromothripsisSim | Source code |
| combineFun | Source code |
| combineRegions | Source code |
| decision | Source code |
| fishersMethod | Source code |
| foldBackScore | Source code |
| foldBackScoreBP | Source code |
| genomeDoubling | Man page Source code |
| getArmCN | Source code |
| getArmInfo | Source code |
| getArmLims | Source code |
| getCNthresh | Man page Source code |
| getChromArmAbberations | Source code |
| getChromInfo | Source code |
| getClustered | Source code |
| getDists | Source code |
| getRearrClass | Man page Source code |
| getRuns | Source code |
| getSingleScore | Source code |
| getVars | Source code |
| identifyBFBsetlength | Source code |
| identifyBFBwindow | Source code |
| loadCytoBand | Source code |
| multiSimTest | Source code |
| nmfFitMetrics | Man page Source code |
| randomJoins | Source code |
| randomOrder | Source code |
| readFile | Source code |
| runSingle | Source code |
| sampleSimScore | Source code |
| segChromPlot | Source code |
| segLengthsExponential | Source code |
| segPlot | Man page Source code |
| setupBFB | Source code |
| simSample | Source code |
| singleBFBCNscore | Source code |
| singleSamp | Source code |
| singleSimTest | Source code |
| splitSeg | Source code |
| splitWindow | Source code |
| swantonScore | Source code |
| swantonTest | Source code |
| walkChrom | Source code |
