Description Usage Arguments Details Value
Function to plot a segment profile., with options to higlight some regions, and plot vertical bars at fusion positions.
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segFile |
Segment file to plot. |
segObj |
Segment object to plot. |
dataDir |
Data directory if |
outDir |
Out directory for plotting. |
fileName |
OUt filename for plotting. |
sampleCol |
Sample column of seg profile. |
chromCol |
Chromsome column of seg profile. |
startCol |
Start column of seg profile. |
endCol |
End column of seg profile. |
nMarkCol |
Seg column with number of markers. |
segMeanCol |
Seg column with copy number. |
highlightChroms |
Chromsomes of regions to highlight. |
highlightStarts |
Start positions of regions to highlight. |
highlightEnds |
End positions of regions to highlight. |
fusionChroms |
Chromosomes of fusions to plot. |
fusionPos |
Positions of fusions to plot. |
segColour |
Colour for segments. |
Plots a segment profile, with options to higlight some regions, and plot vertical bars at fusion positions.
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