getCNthresh: CNomplexity::getCNthresh
In SteeleCD/CNomplexity: Analysis of Complex Copy Cumber and Structural Variants in Cancer Genomes.
Description
Usage
Arguments
Value
Description
Method to adjust CN change threshold for ploidy and purity of sample.
Usage
1
getCNthresh(purity=0.7,ploidy=2.89,ratio=1.27)
Arguments
purity
Purity of sample.
ploidy
Ploidy of sample, or average ploidy across cohort.
ratio
Required ratio to call CN change.
Value
Threshold above or below which to call a CN change.
SteeleCD/CNomplexity documentation built on May 29, 2019, 2:09 p.m.
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Description Usage Arguments Value
Description
Method to adjust CN change threshold for ploidy and purity of sample.
Usage
1 | getCNthresh(purity=0.7,ploidy=2.89,ratio=1.27)
|
Arguments
purity |
Purity of sample. |
ploidy |
Ploidy of sample, or average ploidy across cohort. |
ratio |
Required ratio to call CN change. |
Value
Threshold above or below which to call a CN change.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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