Man pages for StevisonLab/genotypeR
SNP Genotype Marker Design and Analysis
| binary_coding | Code genotypes as binary |
| CO | Where crossovers occur per individual with 2 ways to deal... |
| convert2qtl_table | write out table for import into rqtl |
| count_CO | Internal function to remove search and remove columns based... |
| genotypeR-class | Class genotypeR. |
| genotypes_data | Genotyping data from the sequenom platform from markers... |
| GoldenGate2iCOM_design | Output GoldenGate markers for assay development with illumina... |
| grep_df_subset | Internal function to remove search and remove columns based... |
| Heterogametic_Genotype_Warnings | Heterogametic warnings |
| illumina_Genotype_Table | Make genotypeR Alt_Ref_Table |
| initialize_genotypeR_data | initialize_genotypeR_data; must provide warning allele |
| make_marker_names | Make genotypeR compliant marker names from the output of... |
| markers | Marker data produced with genotypeR |
| read_in_illumina_GoldenGate | Read in Illumina GoldenGate AB tab delimited text file |
| read_in_Master_SNPs_data | Read in GrandMasterSNPs output |
| read_in_sequenom_data | Read in Sequenom Data |
| Ref_Alt_Table | Make reference/alternate allele table from make_marker_names... |
| SequenomMarkers | R wrapper script to run Sequenom Marker design pipeline |
| sort_sequenom_df | Sequenom Data frame Sort |
| subsetChromosome | Subset genotypeR object by chromosome |
| zero_one_two_coding | Code genotypes as 0, 1, 2 |
