genotypeR-class: Class genotypeR.

In StevisonLab/genotypeR: SNP Genotype Marker Design and Analysis

Description

Class genotypeR Defines a class and data structure for working with genotyping data.

Generic genotypes.

Method impossible_genotype.

Method binary_genotypes.

Method counted_crossovers.

Method binary_genotypes<-.

Method genotypes<-.

Method counted_crossovers<-.

Method show.

Usage

genotypes(object, ...)

## S4 method for signature 'genotypeR'
genotypes(object)

impossible_genotype(object, ...)

## S4 method for signature 'genotypeR'
impossible_genotype(object)

binary_genotypes(object, ...)

## S4 method for signature 'genotypeR'
binary_genotypes(object)

counted_crossovers(object, ...)

## S4 method for signature 'genotypeR'
counted_crossovers(object)

binary_genotypes(object) <- value

## S4 replacement method for signature 'genotypeR'
binary_genotypes(object) <- value

genotypes(object) <- value

## S4 replacement method for signature 'genotypeR'
genotypes(object) <- value

counted_crossovers(object) <- value

## S4 replacement method for signature 'genotypeR'
counted_crossovers(object) <- value

show(object, value)

## S4 method for signature 'genotypeR'
show(object, value)

Arguments

object	is a genotypeR object
...	is ...
value	is a value

Slots

genotypes

is a data frame of genotypes

impossible_genotype

is a vector with Ref/Alt that is the impossible genotype in a back cross design

binary_genotypes

is a data frame of numeric coded genotypes

counted_crossovers

is a data frame of counted crossovers

StevisonLab/genotypeR documentation built on May 5, 2019, 8 p.m.