Description Usage Arguments Value Examples
illumina_Genotype_Table
produces the Alt_Ref_Table needed
by initialize_genotypeR_data
from illumina's
goldengate platform.
1 | illumina_Genotype_Table(tab_delimited_file, flanking_region_length, chromosome)
|
tab_delimited_file |
is a tab delimited AB illumina GoldenGate file |
flanking_region_length |
is the length in bp of the flanking region of the SNP |
chromosome |
is a vector of chromosome names |
data frame useful used in genotypeR
1 2 3 4 5 6 7 8 9 10 | ## Not run:
##Files not included to provide working example
test_data <- read_in_illumina_GoldenGate(tab_delimited_file="path_to_goldengate_file"
, flanking_region_length=50, chromosome=rep("chr2",
length.out=length(552960)))
illumina_table <- illumina_Genotype_Table(tab_delimited_file= \
"path_to_goldengate_file", flanking_region_length=50,
chromosome=rep("chr2", length.out=length(552960)))
## End(Not run)
|
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