inst/test/description_of_test_projects.R

In StoXProject/RstoxFramework: The Engine of StoX

# Description of the test projects:

# BIAS_19_ICES.zip: 
# This project is a swept-area project reading ICESBiotic-xml file, where maturity is interpreted and reported on.

# catch_99.zip: 
# This project generates a table with catch weight or number per station in the rows and species in the columns (added info about the hauls in the first columns).

# cod_19.zip: 
# This project is a swept-area project creaetd by reducing an official project for cod in 2019 to only contain data in two strata. 50 bootstrap rerplicates are used. DistributionMethod = "HaulDenstiy" in SuperIndividuals().

# export_ICESAcoustic.zip:
# This project reads an ICESAcoustic-xml file generated by LSSS and exports ICESAcoustic-csv file.

# export_ICESbiotic.zip:
# This project reads an NMDBiotic-xml file (version 3.1) converts to ICESBiotic, modifies the result, and exports ICESBiotic-csv file.

# haddock_19.zip:
# This project is a swept-area project with only Baseline, where some hauls in the same stratum have identical TowDistance and number of fish sampled in some length groups, leading to a bug in StoX 3.0.8, where unique() was used in DistributionMethod = "HaulDensity" in SuperIndividuals().

# splitNASC_18.zip:
# This project is an acoustic-trawl project where the acoustic data in a mix acoustic category are split using the function SplitMeanNASC().

# tobis_20.zip: 
# This project is an acoustic-trawl project creaetd by reducing an official project for sandeel in 2020 to only contain data in two strata. 50 bootstrap replicates are used. DistributionMethod = "Equal" in SuperIndividuals(). WeightingMethod = "NumberOfLengthSamples" with MaxNumberOfLengthSamples = 100 in BioticAssignmentWeighting().

# tobis_20_depth.zip
# Same as tobis_20.zip but with depth dependent acoustic target strength.