Draft of factorial manuscript (as a package)

add_counts | Add counts to the levels of a factor |

constructPseudoR2 | calculate pseudo-R^2 for every row based on a dispersion... |

construct_R2s | construct R2 across all conditions |

do_row | perform an operation on each line of a rowwise data frame |

geom_sided_violin | a violin plot with two sides |

inflate | Expand a dataset to include all factorial combinations of one... |

normalizeMatrix | Normalize an RS/MA matrix according to the appropriate... |

normalizeMatrix.matrix | Normalize an RNA-Seq matrix |

pathway | 30 genes involved in biologically relevant pathways |

perform_edgeR | Perform edgeR exact test on a matrix, given the groups |

pool_matrix.matrix | Given a microarray/RNASeq matrix and a subset of columns,... |

pool_matrix.RGList | method for pooling an RGList object |

prepare_SRA | prepare BioSample metadata for the Short Read Archive upload |

preprocess | create R datasets that end up in the data/ subdirectory, such... |

R2s | compute R-squared values for many genes |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.