Files in StoreyLab/factorial-MA-RS
Draft of factorial manuscript (as a package)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/R2.R
R/data.R
R/geom_sided_violin.R
R/normalize.R
R/perform_edgeR.R
R/pool_matrix.R
R/prepare_SRA.R
R/preprocess.R
R/pseudoR2.R
R/utilities.R
README.md
data/dubious.rda
data/experimentDesign.rda
data/microarrayGreenMatrix.rda
data/microarrayMatrix.rda
data/microarrayRedMatrix.rda
data/pathway.rda
data/plateReader.rda
data/qPCR.rda
data/rnaseqMatrix.rda
data/submatrices.rda
data/subsamples.rda
factorial.Rproj
inst/doc/factorial.R
inst/doc/factorial.Rnw
inst/doc/factorial.pdf
inst/extdata/count_matrix.txt
inst/extdata/microarray.Rdata
inst/extdata/plate_reader_09092014.txt
inst/extdata/qPCR_data.txt
inst/extdata/special_genes.txt
man/R2s.Rd
man/add_counts.Rd
man/constructPseudoR2.Rd
man/construct_R2s.Rd
man/do_row.Rd
man/geom_sided_violin.Rd
man/inflate.Rd
man/normalizeMatrix.Rd
man/normalizeMatrix.matrix.Rd
man/pathway.Rd
man/perform_edgeR.Rd
man/pool_matrix.RGList.Rd
man/pool_matrix.matrix.Rd
man/prepare_SRA.Rd
man/preprocess.Rd
vignettes/.build.timestamp
vignettes/NAR-natbib.sty
vignettes/NAR.cls
vignettes/crop.sty
vignettes/factorial.Rnw
vignettes/factorial.bbl
vignettes/factorial.pdf
vignettes/figure/figure_2-1.pdf
vignettes/figure/figure_3-1.pdf
vignettes/figure/figure_4-1.pdf
vignettes/figure/figure_5-1.pdf
vignettes/figure/figure_6-1.pdf
vignettes/fleqn.clo
vignettes/images/figure_1.png
vignettes/output/submatrices.rda
vignettes/refs.bib
vignettes/saved_objects.Rdata
vignettes/supplementary.Rnw
vignettes/supplementary.bbl
vignettes/supplementary.pdf
vignettes/times.sty
