Man pages for StoreyLab/popkin
Estimate Kinship and FST under Arbitrary Population Structure
| admix_label_cols | Label ancestries based on best match to individual labels |
| admix_order_cols | Reorder admixture matrix columns |
| avg_kinship_subpops | Calculate a kinship matrix between subpopulations by... |
| fst | Calculate FST from a population-level kinship matrix or... |
| hgdp_subset | HGDP subset |
| inbr | Extract inbreeding coefficients from a kinship matrix |
| inbr_diag | Replace kinship diagonal with inbreeding coefficients |
| mean_kinship | Calculate the weighted mean kinship |
| n_eff | Calculates the effective sample size of the data |
| plot_admix | Make a structure/admixture plot |
| plot_phylo | Plot a 'phylo' tree object |
| plot_popkin | Visualize one or more kinship matrices and other related... |
| popkin | Estimate kinship from a genotype matrix and subpopulation... |
| popkin_A | Compute popkin's 'A' and 'M' matrices from genotypes |
| popkin_af | Estimate coancestry from an allele frequency matrix and... |
| popkin_A_min_subpops | Estimate the minimum expected value of a matrix 'A' using... |
| popkin-package | A package for estimating kinship and FST under arbitrary... |
| pwfst | Estimate the individual-level pairwise FST matrix |
| rescale_popkin | Rescale kinship matrix to set a given kinship value to zero. |
| validate_kinship | Validate a kinship matrix |
| weights_subpops | Get weights for individuals that balance subpopulations |
