API for SunPathLab/Butte
BoUnds of Time Till Expansion, inferring the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s).
| Global functions | |
|---|---|
| .estimateQ | Man page Source code |
| .lpbounds | Man page Source code |
| .parametricSimulation | Source code |
| Butte | Man page Source code |
| bootstrapButte | Man page Source code |
| chrCumCoor | Source code |
| cnmutData | Man page Source code |
| cnmutHistory | Man page Source code |
| errorAF | Source code |
| mergeCNA | Man page Source code |
| mleAF | Source code |
| prepareCytoband | Source code |
| purityEst | Source code |
| scnaInput | Man page Source code |
| scnaTiming | Man page Source code |
| ssnvInput | Man page Source code |
| vafEst | Man page Source code |
