mergeCNA: Merge the CNA by jumping (neglecting) small segments
In SunPathLab/Butte: BoUnds of Time Till Expansion, inferring the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s).
mergeCNA R Documentation
Merge the CNA by jumping (neglecting) small segments
Description
When CNA segmentation contains many small segments, one may want to
merge the two neighboring segments by skipping the small segment.
Usage
mergeCNA(cnFile, skipchunk = 19, correctMale = FALSE)
Arguments
cnFile
the SCNA segmentation file
skipchunk
segments with number of data points (probes) no more than this number will be skipped, set it to zero if not skipped
correctMale
logical, whether or not divide by 2 for the X chromosome (testing)
Value
data frame of the merged CNA segmentation
SunPathLab/Butte documentation built on Sept. 19, 2023, 9:42 a.m.
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| mergeCNA | R Documentation |
Merge the CNA by jumping (neglecting) small segments
Description
When CNA segmentation contains many small segments, one may want to merge the two neighboring segments by skipping the small segment.
Usage
mergeCNA(cnFile, skipchunk = 19, correctMale = FALSE)
Arguments
cnFile |
the SCNA segmentation file |
skipchunk |
segments with number of data points (probes) no more than this number will be skipped, set it to zero if not skipped |
correctMale |
logical, whether or not divide by 2 for the X chromosome (testing) |
Value
data frame of the merged CNA segmentation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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