cnmutHistory: generate history matrix in relating SCNA to SSNVs
In SunPathLab/Butte: BoUnds of Time Till Expansion, inferring the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s).
View source: R/cnmutHistoryMatrix.R
cnmutHistory R Documentation
generate history matrix in relating SCNA to SSNVs
Description
Given a SCNA configuration Nt (total copy) and Nb (minor copy)
this function produces the possible history matrices in relating
CN timing (time period for each stage) to the burden of SSNVs
at distinct allele states.
Usage
cnmutHistory(nt, nb)
Arguments
nt
total copy number
nb
copy number of the minor allele
Value
A list of possible matrices
SunPathLab/Butte documentation built on Sept. 19, 2023, 9:42 a.m.
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View source: R/cnmutHistoryMatrix.R
| cnmutHistory | R Documentation |
generate history matrix in relating SCNA to SSNVs
Description
Given a SCNA configuration Nt (total copy) and Nb (minor copy) this function produces the possible history matrices in relating CN timing (time period for each stage) to the burden of SSNVs at distinct allele states.
Usage
cnmutHistory(nt, nb)
Arguments
nt |
total copy number |
nb |
copy number of the minor allele |
Value
A list of possible matrices
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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