bootstrapButte: Bootstrap for the CI of timing estimates

In SunPathLab/Butte: BoUnds of Time Till Expansion, inferring the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s).

Bootstrap for the CI of timing estimates

Description

the corresponding SCNA evolution.

Usage

bootstrapButte(
  eventOrdering,
  B,
  type = c("parametric", "bootstrap"),
  pi,
  x,
  m,
  call
)

Arguments

eventOrdering	is the list returned by Butte
B	is the number of bootstrapping samples
type	"bootstrap" for resample the data; or "parametric" to simulate randomized data
pi	is the estimate of pi you want to use for bootstrapping
x	the data to bootstrap
m	the data to bootstrap
call	list of original argument settings used in calling Butte

Value

timing estimates of bootstrapped data

SunPathLab/Butte documentation built on Sept. 19, 2023, 9:42 a.m.