Files in SunPathLab/Butte
BoUnds of Time Till Expansion, inferring the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s).
DESCRIPTION
LICENSE
Math_modeling/README.md
Math_modeling/branching_processes_evolution.m
Math_modeling/branching_processes_main.m
Math_modeling/branching_processes_main_one_type.m
Math_modeling/branching_processes_time.m
Math_modeling/find_position.m
Math_modeling/identify_SFS_in_second_type.m
Math_modeling/identify_SFS_time.m
Math_modeling/main.m
NAMESPACE
R/bootstrap.R
R/butte.R
R/cnmut.R
R/cnmutHistoryMatrix.R
R/estimateQ.R
R/sync/.RData
R/sync/test.R
R/vafUtil.R
README.md
assets/badges/badge_butte.svg
cytoband_hg38.txt
demo/demo.R
demo/exampleData.rda
demo/example_scna.tsv
demo/example_ssnv.tsv
man/Butte.Rd
man/Butte_0.0.0.9000.pdf
man/bootstrapButte.Rd
man/cnmutData.Rd
man/cnmutHistory.Rd
man/dot-estimateQ.Rd
man/dot-lpbounds.Rd
man/mergeCNA.Rd
man/scnaInput.Rd
man/scnaTiming.Rd
man/ssnvInput.Rd
man/vafEst.Rd
