ClamMap3: ClamMap
In SurfClam/bio.surfclam:

Description Usage Arguments Author(s) Examples

View source: R/ClamMap3.R

ClamMap

ClamMap3(logdata, SelBank, area = "custom", ylim = c(40, 52),
  xlim = c(-74, -47), mapRes = "HR", land.col = "wheat", title = "",
  nafo = NULL, boundaries = "clam", bathy.source = "topex",
  isobaths = seq(100, 1000, 100), bathcol = rgb(0, 0, 1, 0.1),
  topolines = NULL, topocol = rgb(0.8, 0.5, 0, 0.2), points.lst = NULL,
  pt.cex = 1, lines.lst = NULL, poly.lst = NULL, contours = NULL,
  image.lst = NULL, color.fun = tim.colors, zlim = NA, grid = NULL,
  stippling = F, lol = F, labels = NULL, labcex = 1.5, LT = T,
  plot.rivers = T, addSummerStrata = F, addsubareas = F, ...)

`logdata`	= is the processed log data from the functions GetLogData() and ProcessLogData().
`SelBank`	= an idicator of the bank which corresponds to the 'bank' variable in logdata. By default 1 is Banquereau and 2 is Grand Bank.
`area`	= 'custom' where xlim & ylim are specified or select from area list below
`mapRes`	= coastline detail ('LR' = low resolution, 'MR' = medium resolution, 'HR' = high resolution, 'UR' = ultra resolution)
`title`	= plot title
`boundaries`	= for ploting specific management boundaries
`bathcol`	= isobath line color, default is transparent blue
`topolines`	= plots topographic lines for specified elevations from topex data
`points.lst`	= points to overlay on map in PBSmapping format - list with 2 elements: 1st element is eventSet (EID, POS, X, Y), 2nd element is eventData (EID, pch, col, etc.)
`lines.lst`	= lines to overlay on map in PBSmapping format - list with 2 elements: 1st element is polySet (PID, SID, POS, X, Y), 2nd element is polyData (PID, SID, lty, col, etc.)
`poly.lst`	= polygons to overlay on map in PBSmapping format - list with 2 elements: 1st element is polySet (PID, SID, POS, X, Y), 2nd element is polyData (PID, SID, border, col, etc.)
`contours`	= plots overlaping polygons as contours (same format as poly.lst)
`image.lst`	= image to overlay on map - list with 3 elements (x, y, z), 'bathymetry' produces image from bathymetry data
`color.fun`	= color function for image
`zlim`	= zlim for image
`grid`	= size of grid in degrees, default is no grid
`stippling`	= adds stippling to land (purely for visual effect)
`lol`	= adds water colored border to coastline (purely for visual effect)
`isobath`	= plots bathymetry lines for specified depths from topex data
`bathcol`	= topolines line color, default is transparent brown