API for SydneyBioX/scClassify
scClassify: single-cell Hierarchical Classification

Global functions
ClassifyError Source code
DWKNNcor Source code
H Source code
H1 Source code
KNNcor Source code
WKNNcor Source code
alpha Source code
calEnsembleRes Source code
calculateSimilarity Source code
collap Source code
constructTree Source code
currentClass Source code
cutdigits Source code
cutree_iterative Source code
cutzeros Source code
digits Source code
distancematrix Source code
doBI Source code
doChisSquared Source code
doDD Source code
doDV Source code
doLimma Source code
featureSelection Source code
fitLC Source code
fitLC_mixture Source code
funMixModel Source code
getEnsembleRes Source code
getN Man page Source code
getPredRes Source code
getResByWeights Source code
getThreshold Source code
getTrainWeights Source code
hierarchyKNNcor Source code
hopach Source code
init_fit Source code
labelstomss Source code
learningCurve Man page Source code
mix_threshold Source code
msscheck Source code
msscollap Source code
msscomplete Source code
mssinitlevel Source code
mssmulticollap Source code
mssnextlevel Source code
mssrundown Source code
msssplitcluster Source code
newnextlevel Source code
newsplitcluster Source code
nonzeros Source code
orderelements Source code
paircoll Source code
plotCellTypeTree Man page Source code
predict_scClassify Man page Source code
predict_scClassifyJoint Man page Source code
predict_scClassifySingle Source code
quiet Source code
reLevelCellTypeTree Source code
runHOPACH Man page Source code
runSampleCal Man page Source code
runSubSampling Source code
scClassify Man page Source code
scClassifyTestRes-class Man page
scClassifyTrainModel Man page Source code
scClassifyTrainModel-class Man page
scClassifyTrainModelList Man page Source code
scClassifyTrainModelList-class Man page
scClassify_example Man page
silcheck Source code
thin_cor Source code
trainClassExample_wang Man page
trainClassExample_xin Man page
train_scClassify Man page Source code
train_scClassifySingle Source code
wtd_rank2 Source code
SydneyBioX/scClassify documentation built on April 6, 2020, 4:20 a.m.