scClassify: single-cell Hierarchical Classification

cellTypeTrain | Accessors of cellTypeTrain for scClassifyTrainModel |

cellTypeTree | Accessors of cellTypeTree for scClassifyTrainModel |

dot-scClassifyTrainModel | The scClassifyTrainModel class |

features | Accessors of features for scClassifyTrainModel |

getN | Function to get the required N given by the accuracy and the... |

learningCurve | Fit learning curve for accuracy matrix |

model | Accessors of model for scClassifyTrainModel |

modelweights | Accessors of modelweights for scClassifyTrainModel |

name | Accessors of name for scClassifyTrainModel |

plotCellTypeTree | To plot cell type tree |

predict_scClassify | Testing scClassify model |

predict_scClassifyJoint | Testing scClassify model (joint training) |

runHOPACH | Create HOPACH tree |

runSampleCal | Run sample size calculation for pilot data for reference... |

scClassify | Train and test scClassify model |

scClassify_example | Example data used in scClassify package |

scClassifyTrainModel-class | An S4 class to stored training model for scClassify |

scClassifyTrainModelList | The scClassifyTrainModelList class |

scClassifyTrainModelList-class | An S4 class to stored a list of training models from... |

trainClassExample_wang | Subset of pretrained model of Wang et al. |

trainClassExample_xin | Subset of pretrained model of Xin et al. |

train_scClassify | Training scClassify model |

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