Man pages for SydneyBioX/scClassify
scClassify: single-cell Hierarchical Classification
| cellTypeTrain | Accessors of cellTypeTrain for scClassifyTrainModel |
| cellTypeTree | Accessors of cellTypeTree for scClassifyTrainModel |
| dot-scClassifyTrainModel | The scClassifyTrainModel class |
| features | Accessors of features for scClassifyTrainModel |
| getN | Function to get the required N given by the accuracy and the... |
| learningCurve | Fit learning curve for accuracy matrix |
| model | Accessors of model for scClassifyTrainModel |
| modelweights | Accessors of modelweights for scClassifyTrainModel |
| name | Accessors of name for scClassifyTrainModel |
| plotCellTypeTree | To plot cell type tree |
| predict_scClassify | Testing scClassify model |
| predict_scClassifyJoint | Testing scClassify model (joint training) |
| runHOPACH | Create HOPACH tree |
| runSampleCal | Run sample size calculation for pilot data for reference... |
| scClassify | Train and test scClassify model |
| scClassify_example | Example data used in scClassify package |
| scClassifyTrainModel-class | An S4 class to stored training model for scClassify |
| scClassifyTrainModelList | The scClassifyTrainModelList class |
| scClassifyTrainModelList-class | An S4 class to stored a list of training models from... |
| trainClassExample_wang | Subset of pretrained model of Wang et al. |
| trainClassExample_xin | Subset of pretrained model of Xin et al. |
| train_scClassify | Training scClassify model |
