R/data.R

In SydneyBioX/scMerge: scMerge: Merging multiple batches of scRNA-seq data

#' @title Subsetted mouse ESC `SingleCellExperiment` object
#' @description A dataset containing 300 cells and 2026 genes 
#' from two batches of mouse ESC data
#' @usage data(example_sce, package = 'scMerge')
#'
#' @format A `SingleCellExperiment` object
#' @source \url{https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-2600/}
#' @references Kolodziejczyk et al.
"example_sce"

#' @title Stably expressed gene list in official gene symbols 
#' for both human and mouse
#' @description  A list includes the stably expressed genes 
#' for both human and mouse
#' @usage data(segList, package = 'scMerge')
"segList"


#' @title Stably expressed gene list in EnsemblGeneID for both human and mouse
#' @description  A list includes the stably expressed genes 
#' for both human and mouse
#' @usage data(segList_ensemblGeneID, package = 'scMerge')
"segList_ensemblGeneID"