Files in TBradley27/filtar_R
A Series of Support Functions for the Main Filtar Workflow
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/AIR_processing.R
R/MergeFasta.R
R/average_dataframes.R
R/filter_mirs.R
R/get_utr_lengths.R
R/reannotate_3utrs.R
R/targetscan.R
README.md
filtar.Rproj
man/AvgBedgraph.Rd
man/AvgSalmonQuant.Rd
man/MergeFasta.Rd
man/filter_contextpp_scores.Rd
man/filter_mature_mirs.Rd
man/filter_miRanda_scores.Rd
man/filter_mir_families.Rd
man/fix_ts_output.Rd
man/get_AIR_file.Rd
man/get_canonical_AIRs.Rd
man/get_full_bed.Rd
man/get_mirna_context.Rd
man/get_mirna_family.Rd
man/get_utr_lengths.Rd
tests/testthat.R
tests/testthat/ensembl_example2.bed
tests/testthat/example_APAtrap.bed
tests/testthat/example_ensembl.bed
tests/testthat/example_targetscan_sites.tsv
tests/testthat/example_targetscan_sites_intermediate.tsv
tests/testthat/expected_utr_lengths.tsv
tests/testthat/hsa_HeLa.APA.txt
tests/testthat/hsa_HeLa.utr.lengths.tsv
tests/testthat/hsa_all_transcripts.txt
tests/testthat/hsa_mature_mirnas.tsv
tests/testthat/hsa_mirna_families.tsv
tests/testthat/human_quant_example.sf
tests/testthat/mirna_seeds.tsv
tests/testthat/mmu_mature_mirnas.tsv
tests/testthat/mmu_mirna_families.tsv
tests/testthat/test_AIR_retrieval.R
tests/testthat/test_AvgBedgraph.R
tests/testthat/test_fix_ts_output.R
tests/testthat/test_get_full_bed.R
tests/testthat/test_get_mirna_context.R
tests/testthat/test_get_mirna_family.R
tests/testthat/test_get_utr_lengths.R
