Man pages for TBradley27/filtar_R
A Series of Support Functions for the Main Filtar Workflow
| AvgBedgraph | Take a merged bedgraph dataframe, and return a dataframe with... |
| AvgSalmonQuant | Get the average abundance per records for multiple salmon... |
| filter_contextpp_scores | Filter context++ scores by the normalised expression values... |
| filter_mature_mirs | Filter full set of mature miRNAs by a list of user selected... |
| filter_miRanda_scores | Filter miRanda scores by the normalised expression values of... |
| filter_mir_families | Filter miRNA family data according to a vector of miRNA name |
| fix_ts_output | fix output from a modified version of the targetscan script... |
| get_AIR_file | Get a full AIR file specific to a given coding transcriptome |
| get_canonical_AIRs | Generate a file of affected isoform ratio (AIR) data for use... |
| get_full_bed | Generates a full comprehensive 3'UTR bed 6 file by... |
| get_mirna_context | get miRNA file needed for computing contextpp scores |
| get_mirna_family | Generates a miRNA family file in specific targetscan format |
| get_utr_lengths | Returns the length of 3'UTRs from bed data |
| MergeFasta | Concatenate fasta seqeunce for fasta records with the same... |
