Description Usage Arguments Value
get miRNA file needed for computing contextpp scores
1 | get_mirna_context(mirna_seed_file, mature_mirnas_file, specific_tax_id)
|
mirna_seed_file |
A file containing miRNA accessions with corresponding seed sequences |
mature_mirnas_file |
A file containing miRNA accessions with corresponding mature miRNA sequences |
specific_tax_id |
- NCBI taxonomic ID |
A file containing the name of the miRNA family, the NCBI species taxonomic ID, the name of the mature miRNA and also the mature miRNA sequence
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