RBFOX2_cisbpRNA_compare: cisbpRNA motif comparisions for RBFOX2 data
In TaliaferroLab/FeatureReachR: Extract Enriched Biological Features From RNA-seq Data
Description
Usage
Format
Source
Description
This is example output of PWM_compare with the CISBPRNA_hs PWM list.
Used in the easy sequence analysis vignette.
Usage
1
Format
A table
- motif
motif name with RBP name
- case
number of motif counts
- ctrl
number of motif counts
- case_freq
number of motif counts normalized to sequence length
- ctrl_freq
number of motif counts normalized to sequence length
- case_tot
the total of all other motif occurances
- ctrl_tot
the total of all other motif occurances
- log2FC
the log2 of case_freq / ctrl_freq
- pval
calculated via wilcox.test
- p_adj
Adjusted p-value by method = "BH"
Source
output from PWM_compare(RBFOX_case, RBFOX_ctrl, "CISBPRNA_hs")
in easy sequence analysis vignette.
TaliaferroLab/FeatureReachR documentation built on Aug. 15, 2021, 2:21 p.m.
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Description Usage Format Source
Description
This is example output of PWM_compare with the CISBPRNA_hs PWM list.
Used in the easy sequence analysis vignette.
Usage
1 |
Format
A table
- motif
motif name with RBP name
- case
number of motif counts
- ctrl
number of motif counts
- case_freq
number of motif counts normalized to sequence length
- ctrl_freq
number of motif counts normalized to sequence length
- case_tot
the total of all other motif occurances
- ctrl_tot
the total of all other motif occurances
- log2FC
the log2 of case_freq / ctrl_freq
- pval
calculated via wilcox.test
- p_adj
Adjusted p-value by method = "BH"
Source
output from PWM_compare(RBFOX_case, RBFOX_ctrl, "CISBPRNA_hs")
in easy sequence analysis vignette.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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