Description Usage Arguments Value See Also Examples
This function compares kmer content between between case and control DNAStringSets
1 | kmer_compare(caseDNAStringSet, ctrlDNAStringSet, k)
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caseDNAStringSet |
A DNAStringSet Object. Use
|
ctrlDNAStringSet |
A DNAStringSet Object. Use
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a summary table including the pvalue as calculated by
wilcox.test, then corrected by p.adjust with the method = "BH".
The mean values for each DNAStringSet, and the log2 Fold
change between those means
write_Sequence, readDNAStringSet,
oligonucleotideFrequency,kmer_by_gene,
cliff.delta
1 2 3 | case_fasta <- Biostrings::readDNAStringSet("example_case.fa")
ctrl_fasta <- Biostrings::readDNAStringSet("example_ctrl.fa")
kmer_compare(case_fasta, ctrl_fasta, 6)
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