Description Usage Arguments Details Author(s) Examples
Create a session track line txt file
1 2 3 4 | createSessionTrackLine.BW(projectName, sessionFileName = NULL,
type = "bigWig", sample.group,
pattern="\.bw$", group.col = NULL,
brewer = "Set2")
|
projectName |
The sub-directory in /home/tapscott/ucsc/bigWig where the bigWig files are stored. |
sessionFileName |
A character string indicating the name of the session track file. If NULL, a txt file named "sessionTrackLines.txt" is created and saved in the current directory. |
type |
"bigWig". |
sample.group |
A factor indicating the sample grouping and the color of the track will be assigned accordingly. |
pattern |
An optional regular expression. Only file names which match the regular expression will be returned. The default if the file names end up with .bw. |
group.col |
A character string indicating the color for the track. If "NULL", the color patette is signed by the brewer arguement. |
brewer |
A character string indicating the name of palette. See RColorBrewer's brewer.pal function. |
The bigWig files must be placed in /home/tapscott/ucsc/bigWig.
Chao-Jen Wong <cwon2@fhcrc.org>
1 2 3 4 5 6 | ## Not run:
setwd("/home/tapscott/ucsc/bigWig/hg19_Dux4_RD_inducible")
getwd()
createSessionTrackLine.BW(projectName="hg19_Dux4_RD_inducible", sample.group=c(1,2))
## End(Not run)
|
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