import_data: read data from a file

In TeamMacLean/pepdiff: Analysing TSL PRM Peptide Data

read data from a file

Description

reads data, renames columns appropriately, discards unused columns, factors and reorders, discards duplicate rows

Usage

import_data(
  file,
  treatment = "genotype",
  bio_rep = "bio_rep",
  tech_rep = "tech_rep",
  quant = "total_area",
  seconds = "seconds",
  gene_id = "gene_id",
  peptide = "peptide_sequence"
)

Arguments

file	Path to the file to load - must be a csv file
treatment	Column containing the treatment of the observation
bio_rep	Column containing the biological replicate of the observation
tech_rep	Column containing the technical replicate of the observation
quant	Column containing the quantitation data
seconds	Column containing timepoint of observation
gene_id	Column containing the id of the gene this hit
peptide	Column containing the sequence of this peptide

Value

tibble with columns id, gene_id, peptide, treatment, seconds, bio_rep, tech_rep, quant

TeamMacLean/pepdiff documentation built on April 24, 2023, 7:48 a.m.