volcano_plot: volcano plot the data

In TeamMacLean/pepdiff: Analysing TSL PRM Peptide Data

volcano plot the data

Description

draws a plot of peptide count against log fc at either protein or peptide level for samples

Usage

volcano_plot(
  l,
  log = FALSE,
  base = 2,
  sig_level = 0.05,
  metric = "bootstrap_t_p_val",
  option = "E",
  direction = -1
)

Arguments

l	list of results data frames, typically from 'compare_many()'
log	log the data
base	base for logging
sig_level	significance cutoff for colour
metric	metric to use for significance
option	viridis colour scheme key to use
direction	viridis colour scheme direction (1/-1)

Value

ggplot2 plot

TeamMacLean/pepdiff documentation built on April 24, 2023, 7:48 a.m.