accessibility_score: Estimates the unranked Accesibility score for TFBS
In TearsWillFall/tfProfiling: An implementation of PeterUlz (https://github.com/PeterUlz/TranscriptionFactorProfiling) TranscriptionFactorProfiling pipeline in R for GNU/Unix based systems
Description
This function takes a DATA.FRAME/ TXT file with the TFBS coverage data and
estimates the Accesibility score as the range between the global maximum and minimum of
the high-frequency signal. In order, to estimate the high-frequency signal, and remove
the local biases the Savitzky-Golay filter is used.
Usage
1
accessibility_score(data = "", output_dir = "", plot = TRUE, verbose = FALSE)
Arguments
data
DATA.FRAME with data or Path to TXT file
output_dir
Directory to output results. If not provided then outputs in current directory
plot
Create a plot with frequency data. Default TRUE.
verbose
Enables progress messages. Default FALSE
TearsWillFall/tfProfiling documentation built on Aug. 7, 2021, 9:40 a.m.
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Description
This function takes a DATA.FRAME/ TXT file with the TFBS coverage data and estimates the Accesibility score as the range between the global maximum and minimum of the high-frequency signal. In order, to estimate the high-frequency signal, and remove the local biases the Savitzky-Golay filter is used.
Usage
1 | accessibility_score(data = "", output_dir = "", plot = TRUE, verbose = FALSE)
|
Arguments
data |
DATA.FRAME with data or Path to TXT file |
output_dir |
Directory to output results. If not provided then outputs in current directory |
plot |
Create a plot with frequency data. Default TRUE. |
verbose |
Enables progress messages. Default FALSE |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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