get_mean_coverage: Calculate mean genome coverage
In TearsWillFall/tfProfiling: An implementation of PeterUlz (https://github.com/PeterUlz/TranscriptionFactorProfiling) TranscriptionFactorProfiling pipeline in R for GNU/Unix based systems
Description
Usage
Arguments
Value
Description
This function takes a TXT file with genome-wide ocverage as input and returns the mean genome coverage
Usage
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get_mean_coverage(
file = "",
output_dir = "",
region = "genome",
sample_name = "",
save = TRUE
)
Arguments
file
Path to file with genome-wide coverage
output_dir
Directory to output results
region
Region for which to get mean coverage. Default genome
sample_name
Sample name
save
Save as TXT. Default TRUE
Value
A double with the mean genome coverage
TearsWillFall/tfProfiling documentation built on Aug. 7, 2021, 9:40 a.m.
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Description Usage Arguments Value
Description
This function takes a TXT file with genome-wide ocverage as input and returns the mean genome coverage
Usage
1 2 3 4 5 6 7 | get_mean_coverage(
file = "",
output_dir = "",
region = "genome",
sample_name = "",
save = TRUE
)
|
Arguments
file |
Path to file with genome-wide coverage |
output_dir |
Directory to output results |
region |
Region for which to get mean coverage. Default genome |
sample_name |
Sample name |
save |
Save as TXT. Default TRUE |
Value
A double with the mean genome coverage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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