plot_feature_rank: Feature Rank plot

In Terkild/scfeaturerank: Feature Rank plot for single-cell analysis

Description

Feature Rank plot

Usage

plot_feature_rank(
  value,
  group = NULL,
  group_names = NA,
  split = NULL,
  celltype_group = NULL,
  cell_color_by = NULL,
  combine = TRUE,
  nrow = 1,
  threshold_y = NA,
  title = NA,
  remove_ylabel = FALSE,
  remove_ylabel_width = 0.92,
  labels = c(),
  widths = NULL,
  ...
)

Arguments

value	Value used for ranking and x-axis (i.e. UMI count).
group	Grouping variable for comparison (i.e. titration).
group_names	Rename group levels (i.e. can be used to append concentration or other info that is marker specific). Named vector (or list of such if split is set).
split	Splitting variable (generates individual plot for each group)
celltype_group	Celltype for grouping cells (i.e. lineage).
cell_color_by	Variable for coloring cells (i.e. celltype). Used for "barcode" plot.
combine	Should plot components be combined (default). If FALSE, a list of plot components will be returned.
nrow	Number of rows to use when wrapping
threshold_y	If not NULL, a threshold line will be drawn at a the set rank. If a single value, same threshold is set for all splits. When splitting, multiple values can be given in a vector (named by split)
title	If not NA, title will be set. If a single value title only first panel will get title. When splitting, multiple values can be given in a vector (named by split)
remove_ylabel	Should y-labels for all but the first panel be removed?
remove_ylabel_width	Decrease relative width of non-first plots by this factor to account for removed y-labels in others
...	Passed on to plot_feature_rank_single().

Value

ggplot2 object or list of ggplot2 objects (if combine=FALSE)

Terkild/scfeaturerank documentation built on March 6, 2021, 1:04 p.m.