plot_lines: Plot interaction plot for traits and genetic markers

In TheJacksonLaboratory/cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

Plot interaction plot for traits and genetic markers

Description

This internal function is called by plot.effects to generate an interaction plot for two markers relating to a trait. If marker2_vals is NULL, the function instead shows the main effect for marker1.

Usage

plot_lines(
  phenoV,
  marker1_vals,
  marker2_vals = NULL,
  pheno_name,
  marker1_label,
  marker2_label,
  ymin = NULL,
  ymax = NULL,
  error_bars
)

Arguments

phenoV	A vector of trait values
marker1_vals	A vector of genotype values for marker1
marker2_vals	A vector of genotype values for marker2.
pheno_name	A string indicating the name of the trait being plotted.
marker1_label	A string indicating the name of marker1
marker2_label	A string indicating the name of marker2
ymin	A numeric value indicating the minimum y value for the plot. If NULL, it will be calculated based on phenoV and error bars.
ymax	A numeric value indicating the maximum y value for the plot. If NULL, it will be calculated based on phenoV and error bars.
error_bars	A string indicating the type of error bars to draw. Can be "sd" for standard deviation, "se" for standard error, or "none".

Value

None

TheJacksonLaboratory/cape documentation built on Feb. 12, 2024, 4:34 p.m.