Files in TheJacksonLaboratory/mousegwas
Run in-bred mouse GWAS
.Rbuildignore
DESCRIPTION
NAMESPACE
R/gemma_tools.R
R/get_genes.R
R/plot_effect.R
R/plot_gemma_lmm.R
R/plot_paired_PVE.R
R/prepare_inrich_input.R
R/run_MultiTrans.R
R/run_pylmm.R
README.md
example/coat_color_MDA.yaml
example/execute_gait_noBL.sh
example/execute_gait_withBL.sh
example/gait_nowild.yaml
example/gait_nowild_noBL.yaml
example/gait_nowild_withBL.yaml
example/gait_paper_strain_survey_2019_11_12.csv
example/gait_shuffle.yaml
example/gait_shuffle_noBL.yaml
example/gait_shuffle_withBL.yaml
example/grooming_nowild.yaml
example/grooming_paper_strain_survey_2019_11_21.csv
example/grooming_shuffle.yaml
exec/plot_INRICH_pvalues.R
exec/postprocess_mv.R
exec/run_GWAS.R
inst/extdata/MPhenotype_MGenotype.csv
inst/extdata/SFARI-Gene_genes_01-13-2021release_01-22-2021export.csv
inst/extdata/block_summary.txt
inst/extdata/gene_attribute_edges.txt
inst/extdata/groups_from_41598_2016_BFsrep19274_MOESM4_ESM.txt
inst/extdata/snp_190703353330.csv.gz
inst/extdata/snp_190703530013.csv.gz
inst/extdata/snp_190703577680.csv.gz
inst/extdata/snp_190703687397.csv.gz
inst/extdata/snp_190703843678.csv.gz
main.nf
man/average_strain.Rd
man/calc_kinship.Rd
man/calc_pylmm_kinship.Rd
man/combine_metaSOFT.Rd
man/combine_metaSOFT_pylmm.Rd
man/execute_lmm.Rd
man/get_gemma.Rd
man/get_genes.Rd
man/get_multi.Rd
man/get_residuals.Rd
man/get_sigmas.Rd
man/get_sigmas_dep.Rd
man/hello.Rd
man/plot_gemma_lmm.Rd
man/rep_peaks.Rd
man/run_C.Rd
man/run_R.Rd
man/run_emma.Rd
man/run_inrich.Rd
man/run_pylmm.Rd
man/run_pylmm_exec.Rd
man/run_slide.Rd
man/write_genes_map.Rd
man/write_inrich_expression.Rd
man/write_inrich_phenotype.Rd
man/write_inrich_snps.Rd
mousegwas.Rproj
nextflow.config
singularity/Singularity
vignettes/mousegwas-vignette.Rmd
