average_strain: Return the beta of each strain. Strains are similar if...
In TheJacksonLaboratory/mousegwas: Run in-bred mouse GWAS
Description
Usage
Arguments
Value
Description
Return the beta of each strain. Strains are similar if identical in SNPs
Usage
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average_strain(
strains_genomes,
phenotypes,
covars,
downsample,
sex,
strain = NULL
)
Arguments
strains_genomes
A table of mice genotypes
phenotypes
A table of mice phenotypes
covars
Covariates to include in lm
downsample
Maximal number of representatives. If 0 use average
sex
A vector which assign sex to each individual, to be crossed with strain
strain
A vector with strain name. If given use it instead of matching.
Value
A list with $genotypes and $phenotypes
TheJacksonLaboratory/mousegwas documentation built on Sept. 27, 2021, 9:14 a.m.
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Description Usage Arguments Value
Description
Return the beta of each strain. Strains are similar if identical in SNPs
Usage
1 2 3 4 5 6 7 8 | average_strain(
strains_genomes,
phenotypes,
covars,
downsample,
sex,
strain = NULL
)
|
Arguments
strains_genomes |
A table of mice genotypes |
phenotypes |
A table of mice phenotypes |
covars |
Covariates to include in lm |
downsample |
Maximal number of representatives. If 0 use average |
sex |
A vector which assign sex to each individual, to be crossed with strain |
strain |
A vector with strain name. If given use it instead of matching. |
Value
A list with $genotypes and $phenotypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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