calc_kinship: Call gemma to calculate kinship matrix
In TheJacksonLaboratory/mousegwas: Run in-bred mouse GWAS
Description
Usage
Arguments
Value
Description
Call gemma to calculate kinship matrix
Usage
1
calc_kinship(genotypes, annot, exec, chrname, basedir, phenofile)
Arguments
genotypes
A data.table with genotypes of all mice
annot
Annotations of markers, including chr column
exec
gemma executable
chrname
chr for LOCO
basedir
base directory to write files to. Will override existing files
phenofile
a file with phenotypes matching the genotypes table
Value
The kinship file name
TheJacksonLaboratory/mousegwas documentation built on Sept. 27, 2021, 9:14 a.m.
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Description Usage Arguments Value
Description
Call gemma to calculate kinship matrix
Usage
1 | calc_kinship(genotypes, annot, exec, chrname, basedir, phenofile)
|
Arguments
genotypes |
A data.table with genotypes of all mice |
annot |
Annotations of markers, including chr column |
exec |
gemma executable |
chrname |
chr for LOCO |
basedir |
base directory to write files to. Will override existing files |
phenofile |
a file with phenotypes matching the genotypes table |
Value
The kinship file name
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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