Files in TheoMichelot/moveHMM
Animal Movement Modelling using Hidden Markov Models
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AIC_moveHMM.R
R/CI.R
R/RcppExports.R
R/allProbs.R
R/angleCI.R
R/exGen.R
R/fitHMM.R
R/getPlotData.R
R/logAlpha.R
R/logBeta.R
R/moveData.R
R/moveHMM.R
R/n2w.R
R/nLogLike.R
R/parDef.R
R/plotPR.R
R/plotSat.R
R/plotStates.R
R/plotStationary.R
R/plot_moveData.R
R/plot_moveHMM.R
R/predictStationary.R
R/predictTPM.R
R/prepData.R
R/print_moveHMM.R
R/pseudoRes.R
R/simData.R
R/splitAtGaps.R
R/stateProbs.R
R/stationary.R
R/summary_moveData.R
R/turnAngle.R
R/utils.R
R/viterbi.R
R/w2n.R
README.md
data/elk_data.RData
data/example.RData
data/haggis_data.RData
inst/CITATION
man/AIC.moveHMM.Rd
man/CI.Rd
man/allProbs.Rd
man/angleCI.Rd
man/dexp_rcpp.Rd
man/dgamma_rcpp.Rd
man/dlnorm_rcpp.Rd
man/dvm_rcpp.Rd
man/dweibull_rcpp.Rd
man/dwrpcauchy_rcpp.Rd
man/elk_data.Rd
man/exGen.Rd
man/example.Rd
man/fitHMM.Rd
man/getPalette.Rd
man/getPlotData.Rd
man/haggis_data.Rd
man/is.moveData.Rd
man/is.moveHMM.Rd
man/logAlpha.Rd
man/logBeta.Rd
man/moveData.Rd
man/moveHMM.Rd
man/n2w.Rd
man/nLogLike.Rd
man/nLogLike_rcpp.Rd
man/parDef.Rd
man/plot.moveData.Rd
man/plot.moveHMM.Rd
man/plotPR.Rd
man/plotSat.Rd
man/plotStates.Rd
man/plotStationary.Rd
man/predictStationary.Rd
man/predictTPM.Rd
man/prepData.Rd
man/print.moveHMM.Rd
man/pseudoRes.Rd
man/simData.Rd
man/splitAtGaps.Rd
man/stateProbs.Rd
man/stationary.Rd
man/summary.moveData.Rd
man/trMatrix_rcpp.Rd
man/turnAngle.Rd
man/viterbi.Rd
man/w2n.Rd
moveHMM.Rproj
src/Makevars
src/RcppExports.cpp
src/densities.h
src/moveHMM_init.c
src/nLogLike.cpp
src/trMatrix.cpp
tests/testthat.R
tests/testthat/test_CI.R
tests/testthat/test_allProbs.R
tests/testthat/test_densities.R
tests/testthat/test_fitHMM.R
tests/testthat/test_logAlpha.R
tests/testthat/test_moveData.R
tests/testthat/test_moveHMM.R
tests/testthat/test_n2w.R
tests/testthat/test_nLogLike.R
tests/testthat/test_parDef.R
tests/testthat/test_prepData.R
tests/testthat/test_simData.R
tests/testthat/test_stateProbs.R
tests/testthat/test_trMatrix_rcpp.R
tests/testthat/test_turnAngle.R
tests/testthat/test_viterbi.R
tests/testthat/test_w2n.R
vignettes/haggis.jpg
vignettes/models.RData
vignettes/moveHMM-custom-plots.Rnw
vignettes/moveHMM-example.Rmd
vignettes/moveHMM-guide.Rnw
vignettes/moveHMM-starting-values.Rnw
vignettes/refs.bib
vignettes/step_angle_figure.pdf
vignettes/struct.pdf
