API for TheoPannetier/DDvTDtools
Compare diversity-dependent (DD) and time-dependent (TD) diversification models

Global functions
assemble_landscape_data Man page Source code
assert_DDvTD_wd Man page Source code
assert_init_k Man page Source code
assert_optim Man page Source code
assert_para Man page Source code
assert_sim Man page Source code
check_convergence_optim Man page Source code
check_duplicated_rows Source code
check_incomplete_rows Source code
check_initpars Man page Source code
check_loglikelihood_exists Source code
check_missing_mcs Source code
compare_method_bd Man page Source code
compare_method_dd Man page Source code
count_errors Man page Source code
cure_error_rows Man page Source code
default_pars2_dd1 Man page Source code
default_pars2_td4 Man page Source code
fill_missing_rows Man page Source code
fit_td_setophaga Man page Source code
fix_indexing Man page Source code
get_Kprime Man page Source code
get_LR_DDvTD Man page Source code
get_avg_ltt_table Man page Source code
get_brts Man page Source code
get_dAIC_DDvTD Man page Source code
get_default_initpars Man page Source code
get_empty_optim_df Man page Source code
get_likelihood_along_K Man page Source code
get_multi_brts Man page Source code
get_n_distrib Source code
get_optim_df_row Man page Source code
get_optim_names Man page Source code
get_para_values Man page Source code
get_possible_init_k Man page Source code
get_sim_multiPhylo Man page Source code
get_sim_names Man page Source code
make_tibble_ltt Source code
para_to_pars Man page Source code
plot_LR_DDvTD Man page Source code
plot_LR_para Man page Source code
plot_avg_ltt Man page Source code
plot_dAIC_DDvTD Man page Source code
plot_dAIC_para Man page Source code
plot_loglik_landscape_K Man page Source code
plot_ltt_nested Man page Source code
plot_n_distrib Man page Source code
plot_quantiles Man page Source code
plot_tree_info Man page Source code
read_optim_table Man page Source code
read_trees Man page Source code
run_ML Man page Source code
run_from_n Man page Source code
run_liklandscapes Man page Source code
simulate_trees Man page Source code
TheoPannetier/DDvTDtools documentation built on July 19, 2019, 8:11 a.m.