Files in TheoPannetier/DDvTDtools
Compare diversity-dependent (DD) and time-dependent (TD) diversification models

.Rbuildignore
.gitignore
.travis.yml
DDvTDtools.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/assemble_landscape_data.R R/assert_DDvTD_wd.R R/assert_init_k.R R/assert_optim.R R/assert_para.R R/assert_sim.R R/check_convergence_optim.R R/check_duplicated_rows.R R/check_incomplete_rows.R R/check_initpars.R R/check_loglikelihood_exists.R R/check_missing_mcs.R R/compare_method_bd.R R/compare_method_dd.R R/count_errors.R R/cure_error_rows.R R/default_pars2_dd1.R R/default_pars2_td4.R R/fill_missing_rows.R R/fit_td_setophaga.R R/fix_indexing.R R/get_Kprime.R R/get_LR_DDvTD.R R/get_avg_ltt_table.R R/get_brts.R R/get_dAIC_DDvTD.R R/get_default_initpars.R R/get_empty_optim_df.R R/get_likelihood_along_K.R R/get_multi_brts.R R/get_n_distrib.R R/get_optim_df_row.R R/get_optim_names.R R/get_para_values.R R/get_possible_init_k.R R/get_sim_multiPhylo.R R/get_sim_names.R R/make_tibble_ltt.R R/para_to_pars.R R/plot_LR_DDvTD.R R/plot_LR_para.R R/plot_avg_ltt.R R/plot_dAIC_DDvTD.R R/plot_dAIC_para.R R/plot_loglik_landscape_K.R R/plot_ltt_nested.R R/plot_n_distrib.R R/plot_quantiles.R R/plot_tree_info.R R/read_optim_table.R R/read_trees.R R/run_ML.R R/run_from_n.R R/run_liklandscapes.R R/simulate_trees.R
README.html
README.md man/assemble_landscape_data.Rd man/assert_DDvTD_wd.Rd man/assert_init_k.Rd man/assert_optim.Rd man/assert_para.Rd man/assert_sim.Rd man/check_convergence_optim.Rd man/check_initpars.Rd man/compare_method_bd.Rd man/compare_method_dd.Rd man/count_errors.Rd man/cure_error_rows.Rd man/default_pars2_dd1.Rd man/default_pars2_td4.Rd man/fill_missing_rows.Rd man/fit_td_setophaga.Rd man/fix_indexing.Rd man/get_Kprime.Rd man/get_LR_DDvTD.Rd man/get_avg_ltt_table.Rd man/get_brts.Rd man/get_dAIC_DDvTD.Rd man/get_default_initpars.Rd man/get_empty_optim_df.Rd man/get_likelihood_along_K.Rd man/get_multi_brts.Rd man/get_optim_df_row.Rd man/get_optim_names.Rd man/get_para_values.Rd man/get_possible_init_k.Rd man/get_sim_multiPhylo.Rd man/get_sim_names.Rd man/para_to_pars.Rd man/plot_LR_DDvTD.Rd man/plot_LR_para.Rd man/plot_avg_ltt.Rd man/plot_dAIC_DDvTD.Rd man/plot_dAIC_para.Rd man/plot_loglik_landscape_K.Rd man/plot_ltt_nested.Rd man/plot_n_distrib.Rd man/plot_quantiles.Rd man/plot_tree_info.Rd man/read_optim_table.Rd man/read_trees.Rd man/run_ML.Rd man/run_from_n.Rd man/run_liklandscapes.Rd man/simulate_trees.Rd scripts/README.md
scripts/install.sh
TheoPannetier/DDvTDtools documentation built on June 25, 2019, 1:08 a.m.