API for TheoPannetier/comrad
R implementation of a Competitive Radiation model
| Global functions | |
|---|---|
| %>% | Man page |
| apply_mutations | Man page Source code |
| apply_speciation | Man page Source code |
| build_spp_tbl | Man page Source code |
| check_dd_model_is_avail | Man page Source code |
| dd_func_colours | Man page Source code |
| dd_func_names | Man page Source code |
| dd_loglik_func | Man page Source code |
| dd_model_colours | Man page Source code |
| dd_model_comrad_to_ddd | Man page Source code |
| dd_model_lc | Man page Source code |
| dd_model_ll | Man page Source code |
| dd_model_lp | Man page Source code |
| dd_model_lx | Man page Source code |
| dd_model_names | Man page Source code |
| dd_model_pc | Man page Source code |
| dd_model_pl | Man page Source code |
| dd_model_pp | Man page Source code |
| dd_model_px | Man page Source code |
| dd_model_to_extinction_func | Man page Source code |
| dd_model_to_speciation_func | Man page Source code |
| dd_model_xc | Man page Source code |
| dd_model_xl | Man page Source code |
| dd_model_xp | Man page Source code |
| dd_model_xx | Man page Source code |
| dd_models | Man page Source code |
| ddd_optimizer | Man page Source code |
| default_carrying_cap_opt | Man page Source code |
| default_carrying_cap_sd | Man page Source code |
| default_competition_sd | Man page Source code |
| default_growth_rate | Man page Source code |
| default_init_comm | Man page Source code |
| default_mutation_sd | Man page Source code |
| default_params_doc | Man page Source code |
| default_pars | Man page |
| default_sampling_frac | Man page Source code |
| default_seed | Man page Source code |
| default_trait_dist_sp | Man page Source code |
| default_trait_opt | Man page Source code |
| draw_comm_next_gen | Man page Source code |
| draw_init_params_dd_ml | Man page Source code |
| draw_nb_offspring | Man page Source code |
| exclude_ephemeral_spp | Man page Source code |
| find_trait_gaps | Man page Source code |
| fit_dd_model_with_fossil | Man page Source code |
| fit_dd_model_without_fossil | Man page Source code |
| fitness_func | Man page |
| fitness_func_logistic | Man page Source code |
| fitness_func_pontarp | Man page Source code |
| fitness_func_ricker | Man page Source code |
| get_carrying_cap | Man page Source code |
| get_comp_coeff_comm | Man page Source code |
| get_dnltt | Man page Source code |
| get_edge_tbl | Man page Source code |
| get_fitness | Man page Source code |
| get_fitness_landscape | Man page Source code |
| get_ltt_tbl | Man page Source code |
| get_n_eff | Man page Source code |
| get_root_age | Man page Source code |
| has_brute_force_opt | Man page Source code |
| interpolate_ltt | Man page Source code |
| ltt_tbl_to_func | Man page Source code |
| plot_aicw_pie | Man page Source code |
| plot_comm_bubbles | Man page Source code |
| plot_comm_size | Man page Source code |
| plot_comm_trait_evolution | Man page Source code |
| plot_comm_traits | Man page Source code |
| plot_comm_traits_anim | Man page Source code |
| plot_compare_dd_functions | Man page Source code |
| plot_dd_func_colours | Man page Source code |
| plot_dd_model_colours | Man page Source code |
| plot_fitness_landscape | Man page Source code |
| plot_fitness_landscape_evol | Man page Source code |
| plot_trait_disparity | Man page Source code |
| rand_comm | Man page Source code |
| rates_from_dd_model | Man page Source code |
| rates_from_exp_dist | Man page Source code |
| read_comrad_tbl | Man page Source code |
| run_simulation | Man page Source code |
| set_sampling_freq | Man page Source code |
| sim_to_phylo | Man page Source code |
| simulate_dd_phylo | Man page Source code |
| sort_by_ref | Man page Source code |
| stem_or_crown | Man page Source code |
| summarise_aicw_over_trees | Man page Source code |
| summarise_waiting_times | Man page Source code |
| test_comrad_comm | Man page Source code |
| test_comrad_tbl | Man page Source code |
| testarg_char | Man page Source code |
| testarg_int | Man page Source code |
| testarg_length | Man page Source code |
| testarg_log | Man page Source code |
| testarg_not_this | Man page Source code |
| testarg_num | Man page Source code |
| testarg_pos | Man page Source code |
| testarg_prop | Man page Source code |
| testargs | Man page |
| transform_pars | Man page Source code |
| untransform_pars | Man page Source code |
| waiting_times | Man page Source code |
| write_newick_str | Man page Source code |
