API for ThomasChln/snpclust
SNP Feature Summarization for Unsupervised Clustering
| Global functions | |
|---|---|
| %$% | Man page |
| %<>% | Man page |
| %>% | Man page |
| .actual_scan_indices | Source code |
| .actual_snp_indices | Source code |
| .add_SNPs | Source code |
| .check_chromosome | Source code |
| .create_gds | Source code |
| .estimate_haplotypes | Source code |
| .format_gds_for_BED2GDS | Source code |
| .format_mcmc | Source code |
| .gds_read_index | Source code |
| .gds_serialize_object | Source code |
| .gds_unserialize_object | Source code |
| .get_haplos | Source code |
| .ggplot_selection | Source code |
| .haplo_features | Source code |
| .haplo_weights | Source code |
| .hclust_classif | Source code |
| .is_block | Source code |
| .map_haplo_indiv | Source code |
| .max_peak | Source code |
| .merge_haplotypes | Source code |
| .peaks_with_gmm | Source code |
| .quantile_chromosome_maxs | Source code |
| .rbind_qc | Source code |
| .separate_peaks | Source code |
| .separate_peaks_by_pos | Source code |
| .split_sorted_ints_by_blocks | Source code |
| .system2 | Source code |
| .tagsnp | Source code |
| .transitive_tagsnp | Source code |
| actg_to_numeric | Source code |
| actg_tsv_to_gdata | Source code |
| bed_to_gds | Source code |
| build_gwastools | Source code |
| check_availability | Source code |
| check_genotype_data | Source code |
| check_snp_gds | Source code |
| compute_pca_coords_vars_sup | Source code |
| compute_pca_obs_sup | Source code |
| compute_pca_prcomp | Source code |
| compute_var_coords_categorical | Source code |
| compute_var_coords_numeric | Source code |
| create_pca_axis_labels | Source code |
| df_rbind_all | Source code |
| draw_corr_circle | Source code |
| draw_pca_vars | Source code |
| features_qc | Source code |
| fetch_allele1 | Source code |
| fetch_allele1.GdsGenotypeReader | Source code |
| fetch_allele1.GenotypeData | Source code |
| fetch_allele1.GenotypeDataSubset | Source code |
| fetch_allele1.default | Source code |
| fetch_allele2 | Source code |
| fetch_allele2.GdsGenotypeReader | Source code |
| fetch_allele2.GenotypeData | Source code |
| fetch_allele2.GenotypeDataSubset | Source code |
| fetch_allele2.default | Source code |
| fetch_gds | Source code |
| fetch_gds.GdsGenotypeReader | Source code |
| fetch_gds.GenotypeData | Source code |
| fetch_gds.GenotypeDataSubset | Source code |
| fetch_gds.default | Source code |
| fetch_genotypes | Source code |
| fetch_genotypes_by_blocks | Source code |
| fetch_genotypes_by_chunk_iterator | Source code |
| fetch_genotypes_by_idx | Source code |
| fetch_hgdp | Source code |
| fetch_snpgds_alleles | Source code |
| gdata_scans_annots | Source code |
| gdata_snps_annots | Source code |
| gdata_subsets | Source code |
| gds_genotype_reader | Source code |
| gds_to_bed | Source code |
| genotype_data_subset | Source code |
| get_features_pca | Source code |
| get_pca | Source code |
| get_pca_individuals | Source code |
| get_pca_vars | Source code |
| get_polymorphic_cols | Source code |
| get_scan_annot | Source code |
| get_scan_annot.GenotypeData | Source code |
| get_scan_annot.GenotypeDataSubset | Source code |
| get_snp_annot | Source code |
| get_snp_annot.GenotypeData | Source code |
| get_snp_annot.GenotypeDataSubset | Source code |
| ggplot_manhat | Man page Source code |
| ggplot_pca | Man page Source code |
| ggplot_selection | Man page Source code |
| haplo_features | Source code |
| haplo_mcmc | Source code |
| ids_subset | Source code |
| impute_bed | Source code |
| is_snp_first_dim | Source code |
| is_snp_first_dim.GdsGenotypeReader | Source code |
| is_snp_first_dim.GenotypeData | Source code |
| is_snp_first_dim.MatrixGenotypeReader | Source code |
| is_snp_first_dim.NcdfGenotypeReader | Source code |
| is_snp_first_dim.default | Source code |
| is_snp_first_dim.gds.class | Source code |
| load_gds_as_genotype_data | Source code |
| merge_dfs | Source code |
| pca_fortify | Source code |
| peak_selection | Source code |
| plink_allele_flip | Source code |
| plink_extract | Source code |
| plink_merge | Source code |
| plink_merge_beds | Source code |
| read_snp_gds_alleles | Source code |
| reduce_hgdp | Source code |
| reorder_pca | Source code |
| request_snpgds_file | Source code |
| sample_impute | Source code |
| save_genotype_data_as_gds | Source code |
| save_genotype_data_as_plink | Source code |
| save_hgdp_as_gds | Man page Source code |
| scale_pca_vars | Source code |
| setup_temp_dir | Source code |
| snp_gds_open | Source code |
| snpclust | Man page Source code |
| snpclust-package | Man page |
| snpclust_features | Source code |
| snprelate_gds_to_bed | Source code |
| snprelate_impute | Source code |
| snprelate_ld_select | Source code |
| snprelate_pca | Man page Source code |
| snprelate_qc | Man page Source code |
| snps_hla | Source code |
| transitive_tagsnp | Source code |
| txt_scans_to_df | Source code |
| txt_snps_to_df | Source code |
| write_common_snps | Source code |
| write_genotypes_to_gds | Source code |
| write_scan_dataset_id | Source code |
| write_snp_gds | Source code |
