Man pages for TomSmithCGAT/OptProc
| addMissing | Simulate missing values with mimimal assumptions |
| bn | Adjust quantification values using bridging channels |
| bridgeNormalise | Adjust quantification values in MSnSet |
| combineTMTsets | Combine TMT sets. |
| getMAQE | Obtain the Mean Absolute Log2 Quotient Error (MAQE) |
| getMARD | Obtain the Mean Absolute Relative Difference (MARD) |
| getOrganelleF1 | Plot the missing values. |
| getQsepDistances | Obtain the QSep distances for an MSnSet with marker proteins... |
| getRMedSE | Obtain the Root median squared error (RMedSE) |
| getRMSE | Obtain the Root mean squared error (RMSE) |
| getTruthImputed | Extract the truth and imputed values |
| hello | Hello, World! |
| imputeOptProc | Impute missing values using either 'MSnbase::impute' or... |
| MaxKnn | Impute missing values using KNN imputation with prior max... |
| mb | Average the bridge sample(s) in a vector of quantification... |
| MeanBridges | Average the bridge sample(s) for each feature in an MSnSet |
| plotMissing | Plot the missing values. |
| plotQsepDistances | Plot the QSep distances obtained from 'getQsepDistances' |
| plotTruthImputed | Plot the truth vs imputed |
| robComp | Impute missing values using compositional KNN imputation |
| SnKnn | Impute missing values using KNN imputation with prior sum... |
| spatial_proteomics_normalise | Normalise data using sum +/- VSN |
