bridgeNormalise: Adjust quantification values in MSnSet

In TomSmithCGAT/OptProc:

Adjust quantification values in MSnSet

Description

Adjust quantification values in MSnSet using bridging channels to normalise across isobaric tag multiplexes. Note that the bridge channels are not normalised.

Usage

bridgeNormalise(
  obj,
  plex1_ix = 1:10,
  plex2_ix = 12:21,
  bridge1_ix = 11,
  bridge2_ix = 22,
  keep_bridge = 0
)

Arguments

plex1_ix	index for quantification values in multiplex 1
plex2_ix	index for quantification values in multiplex 2
bridge1_ix	index for bridge sample(s) in multiplex 1
bridge2_ix	index for bridge sample(s) in multiplex 1
keep_bridge	How many values to retain for each bridge sample (0, 1, or 2)
values	vector of quantification values

Value

bridge normalised values

TomSmithCGAT/OptProc documentation built on July 22, 2023, 12:08 a.m.