Files in TransBioInfoLab/MethReg
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
.Rbuildignore
.gitignore
.gitlab-ci.yml
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/MethReg.R
R/cor_dnam_target_gene.R
R/cor_tf_target_gene.R
R/create_triplet_distance_based.R
R/create_triplet_regulon_based.R
R/filter_by_quantile.R
R/get_human_tfs.R
R/get_promoter_avg.R
R/get_region_target_gene.R
R/get_residuals.R
R/get_tf_in_region.R
R/interaction_model.R
R/methReg_analysis.R
R/multiple_testing_correction.R
R/plot_interaction_model.R
R/plot_stratified_model.R
R/regulons.R
R/remap2022.R
R/stratified_model.R
R/sysdata.rda
R/utils.R
README.Rmd
README.md
_pkgdown.yml
data/clinical.rda
data/dna.met.chr21.rda
data/gene.exp.chr21.log2.rda
inst/CITATION
man/MethReg.Rd
man/clinical.Rd
man/cor_dnam_target_gene.Rd
man/cor_tf_target_gene.Rd
man/create_triplet_distance_based.Rd
man/create_triplet_regulon_based.Rd
man/dna.met.chr21.Rd
man/filter_dnam_by_quant_diff.Rd
man/filter_exp_by_quant_mean_FC.Rd
man/filter_genes_zero_expression.Rd
man/gene.exp.chr21.log2.Rd
man/get_human_tfs.Rd
man/get_met_probes_info.Rd
man/get_promoter_avg.Rd
man/get_region_target_gene.Rd
man/get_residuals.Rd
man/get_tf_ES.Rd
man/get_tf_in_region.Rd
man/interaction_model.Rd
man/make_dnam_se.Rd
man/make_exp_se.Rd
man/make_granges_from_names.Rd
man/make_names_from_granges.Rd
man/methReg_analysis.Rd
man/plot_interaction_model.Rd
man/plot_stratified_model.Rd
man/readRemap2022.Rd
man/stratified_model.Rd
tests/testthat.R
tests/testthat/test-classes.R
tests/testthat/test-cor_dnam_target_gene.R
tests/testthat/test-create_triplet_distance_based.R
tests/testthat/test-filter_by_quantile.R
tests/testthat/test-get_human_tfs.R
tests/testthat/test-get_promoter_avg.R
tests/testthat/test-get_region_target_gene.R
tests/testthat/test-get_residuals.R
tests/testthat/test-get_tf_in_region.R
tests/testthat/test-interaction_model.R
tests/testthat/test-plot_interaction_model.R
tests/testthat/test-plot_stratified_model.R
tests/testthat/test-stratified_model.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/MethReg.Rmd
vignettes/bibliography.bib
vignettes/highlight.pack.js
vignettes/mapping_target_strategies.png
vignettes/scenarios.png
vignettes/styles/stackoverflow-dark.css
vignettes/workflow_methReg.png
