View source: R/filter_by_quantile.R
filter_exp_by_quant_mean_FC | R Documentation |
For each gene, compares the mean gene expression levels in samples in high expression (Q4) vs. samples with low gene expression (Q1), and requires the fold change to be above a certain threshold.
filter_exp_by_quant_mean_FC(exp, fold.change = 1.5, cores = 1)
exp |
Gene expression matrix or SumarizedExperiment object |
fold.change |
Threshold for fold change of mean gene expression levels in samples with high (Q4) and low (Q1) gene expression levels. Defaults to 1.5. |
cores |
Number of CPU cores to be used in the analysis. Default: 1 |
A subset of the original matrix only with the rows passing the filter threshold.
data("gene.exp.chr21.log2")
gene.exp.chr21.log2.filtered <- filter_exp_by_quant_mean_FC(
gene.exp.chr21.log2
)
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