ShowExperimentdata-PathwayObject-method: ShowExperimentdata

Description Usage Arguments Value Examples

Description

ShowExperimentdata

Usage

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## S4 method for signature 'PathwayObject'
ShowExperimentdata(Object)

Arguments

Object

a PathwayObject

PathwayObject

a PathwayObject

Value

a table with experiment data.

Examples

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IPA.files <- c(system.file("extdata",
                           "MM10.IPA.KO.uGvsMac.Canonical_pathways.xls",
                            package = "GeneSetCluster"),
             system.file("extdata",
                            "MM10.IPA.WT.uGvsMac.Canonical_pathways.xls",
                             package = "GeneSetCluster"),
             system.file("extdata",
                             "MM10.IPA.KO.uGvsMac.Functional_annotations.xls",
                             package = "GeneSetCluster"),
             system.file("extdata",
                             "MM10.IPA.WT.uGvsMac.Functional_annotations.xls",
                             package = "GeneSetCluster"))
canonical.files <- IPA.files[grep("Canonical", IPA.files)]

IPA.object1 <- LoadGeneSets(file_location = canonical.files,
                         groupnames= c("KO", "WT"),
                         P.cutoff = 1.3,
                         Mol.cutoff = 5,
                         Source = "IPA",
                         type = "Canonical_Pathways",
                         structure = "SYMBOL",
                         seperator = ",")
ShowExperimentdata(Object =IPA.object1 )

TranslationalBioinformaticsUnit/GeneSetCluster documentation built on April 1, 2020, 11:26 a.m.