Files in TranslationalBioinformaticsUnit/GeneSetCluster

Cluster together Gene-Sets from Gene Set Analysis

DESCRIPTION

GeneSetClustes.v1.2.Rproj

LICENSE

NAMESPACE

R/BreakUpCluster.R R/ClusterGeneSets.R R/CombineGeneSets.R R/GeneSetCluster.R

R/GeneSetCluster.pipeline

R/GenesPerGeneSet.r

R/GenesPerGeneset.Count.fc

R/GetOptimalCluster.R R/GetSTRINGdbPerGeneSets.R R/HighlightGeneSets.R R/LoadGeneSets.R R/ManageGeneSets.R R/MeanClusterDifferences.R R/MergeObjects.R R/ORAGeneSets.R R/ObjectCreator.R R/OptimalGeneSets.R R/PathwayObject.R R/PlotGeneDedrogram.R R/PlotGeneNetworks.R R/PlotGeneSets.R

R/RR_stats

R/ShowExperimentdata.R R/ShowGeneSets.R R/ShowMeta.R R/Umap.3d_Interactive.GeneSets.R R/UmapGeneSets.R R/VennDiagram.R R/WriteGeneSets.R R/data.R R/plotSTRINGdbPerGeneSets.R README.md

build/vignette.rds

data/Redox.genes.rda

data/datalist

fig/BreakUpCluster.V1.png

fig/Capture_GenesPerGeneSet_v1.PNG

fig/Capture_Loaded_Table_v1.PNG

fig/Capture_Loaded_Table_v2.png

fig/Capture_Loaded_Table_v3.PNG

fig/Capture_STRING_v2.PNG

fig/EEWING_Optimal_clustersGAP.png

fig/EEWING_Optimal_clusterselbow.png

fig/EEWING_Optimal_clusterssilhouette.png

fig/Figure1_20190826.png

fig/GREAT.load.png

fig/GeneSetCluster_Outline_revision.png

fig/Highlight_genes.png

fig/IPA.LOAD.png

fig/Logo.png

fig/Logo_small.png

fig/Networks_1.png

fig/Networks_2.png

fig/Networks_3.png

fig/Networks_4.png

fig/Networks_5.png

fig/Object_creator_test.png

fig/PathwayObject_content.PNG

fig/Venndiagram.png

fig/jaccard.png

fig/pathways.mtx.png

fig/plotgenes.png

fig/plotgenes2.png

inst/doc/GeneSetCluster.R

inst/doc/GeneSetCluster.html

inst/doc/GeneSetCluster.rmd

inst/extdata/MM10.GREAT.KO.uGvsMac.bed.tsv

inst/extdata/MM10.GREAT.KO.uGvsMac.bed_BCKGRND.tsv

inst/extdata/MM10.GREAT.WT.uGvsMac.bed.tsv

inst/extdata/MM10.GREAT.WT.uGvsMac.bed_BCKGRND.tsv

inst/extdata/MM10.IPA.KO.uGvsMac.Canonical_pathways.xls

inst/extdata/MM10.IPA.KO.uGvsMac.Functional_annotations.xls

inst/extdata/MM10.IPA.WT.uGvsMac.Canonical_pathways.xls

inst/extdata/MM10.IPA.WT.uGvsMac.Functional_annotations.xls

man/ClusterGeneSets.Rd man/CombineGeneSets.Rd man/GeneSetCluster.Rd man/GenesPerGeneSet-PathwayObject-method.Rd man/GenesPerGeneSet.Rd man/GetSTRINGdbPerGeneSets.Rd man/HighlightGeneSets.Rd man/LoadGeneSets.Rd man/ManageGeneSets.Rd man/MergeObjects.Rd man/ORAGeneSets.Rd man/ObjectCreator.Rd man/OptimalGeneSets.Rd man/PathwayObject-class.Rd man/PlotGeneDendrogram-PathwayObject-method.Rd man/PlotGeneDendrogram.Rd man/PlotGeneNetworks-PathwayObject-method.Rd man/PlotGeneNetworks.Rd man/PlotGeneSets-PathwayObject-method.Rd man/PlotGeneSets.Rd man/Redox.genes.Rd man/ShowExperimentdata-PathwayObject-method.Rd man/ShowExperimentdata.Rd man/ShowGeneSets-PathwayObject-method.Rd man/ShowGeneSets.Rd man/ShowMeta-PathwayObject-method.Rd man/ShowMeta.Rd man/VennDiagram.Rd man/WriteGeneSets-PathwayObject-method.Rd man/WriteGeneSets.Rd man/plotSTRINGdbPerGeneSets.Rd vignettes/GeneSetCluster.R

vignettes/GeneSetCluster.html

vignettes/GeneSetCluster.rmd

vignettes/img/Great.png

vignettes/img/IPA.PNG

vignettes/img/Pipeline.png

TranslationalBioinformaticsUnit/GeneSetCluster documentation built on Feb. 2, 2023, 4:06 a.m.