#' ShowExperimentdata
#'
#' Show Experiment data
#'
#' @param Object a PathwayObject
#'
#' @return a table with experiment data.
#' @export
setGeneric(name="ShowExperimentdata",
def=function(Object)
{
standardGeneric("ShowExperimentdata")
}
)
#' ShowExperimentdata
#'
#' @param Object a PathwayObject
#' @param PathwayObject a PathwayObject
#'
#' @return a table with experiment data.
#' @export
#'
#' @examples
#' IPA.files <- c(system.file("extdata",
#' "MM10.IPA.KO.uGvsMac.Canonical_pathways.xls",
#' package = "GeneSetCluster"),
#' system.file("extdata",
#' "MM10.IPA.WT.uGvsMac.Canonical_pathways.xls",
#' package = "GeneSetCluster"),
#' system.file("extdata",
#' "MM10.IPA.KO.uGvsMac.Functional_annotations.xls",
#' package = "GeneSetCluster"),
#' system.file("extdata",
#' "MM10.IPA.WT.uGvsMac.Functional_annotations.xls",
#' package = "GeneSetCluster"))
#' canonical.files <- IPA.files[grep("Canonical", IPA.files)]
#'
#' IPA.object1 <- LoadGeneSets(file_location = canonical.files,
#' groupnames= c("KO", "WT"),
#' P.cutoff = 1.3,
#' Mol.cutoff = 5,
#' Source = "IPA",
#' type = "Canonical_Pathways",
#' structure = "SYMBOL",
#' seperator = ",")
#' ShowExperimentdata(Object =IPA.object1 )
setMethod(f="ShowExperimentdata",
signature="PathwayObject",
definition=function(Object)
{
return(Object@PData)
}
)
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