README.md

In Troshchk/bioEAT: bioExploreAnnotateTranslate

bioEAT

The aim of bioEAT is to provide functionality to Explore data, make gene Annotation exhaustive and simplify the gene IDs Translation between different organisms.

Installation

This package could be installed from this GitHub.

To install a package from GitHub, you will first need to install devtools:

# Install devtools from CRAN
install.packages("devtools")

Further you may install bioEAT:

devtools::install_github("Troshchk/bioEAT")

Usage

For the data exploration: - find the non-overlapping elements of two vectors with outersect() - get main n pca components with get_main_pca() - calculate the logFold change between two dataframe columns and order the result with logfc() - calculate and visualize Shannon entropy sh_entropy() (usage expanation and example)

For the data annotation: - use OrgDB and maRt in one function with conv_ids_full()

The part for the data translation is under development.

For more information about the package and the functions refer to the documentation.

Author

Ksenia Troshchenkova

[e-mail]

GitHub

LinkedIn

Troshchk/bioEAT documentation built on Dec. 18, 2021, 5:13 p.m.